Please contact Michael Calderwood with questions regarding interactome projects.

Tech Support

Please contact Tong Hao with your questions or comments.
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Acknowledgments

CCSB interactome mapping and ORFeome cloning efforts are supported by federal grants from the National Human Genome Research Institute, the National Cancer Institute and the National Science Foundation, and by funding from the Dana-Farber Cancer Institute Strategic Initiative, The Ellison Foundation and the W. M. Keck Foundation.

Plant Interactome Download Page

Publications

Arabidopsis Interactome Mapping Consortium. (Dreze M, Carvunis AR, Charloteaux B, Galli M, Pevzner SJ, Tasan M co-first authors; Braun P, Vidal M, Ecker JR, Hill DE co-corresponding authors)

Evidence for network evolution in an Arabidopsis interactome map.

Science 2011; 333:601-7.

Commentary, Science

Research Highlight, Nat Rev Genet

Editor's Choice, Sci Signal

Arabidopsis Interactome, version 1 (AI-1)

Dataset	Description
Arabidopsis protein-protein interactions	All protein-protein interactions from AI-1 and literature databases *
Reference sets	Positive and random reference sets
Space 1 proteins	List of Space 1 proteins

Plant-Pathogen Immune Network, version 1 (PPIN-1)

Supplementary Table 1	Pathogen ORF clones and Arabidopsis immunity-related ORF clones used to map PPIN-1.
Supplementary Table 2, part A	Protein-protein interactions experimentally mapped in Mukthar et al. (Figure 1B). Note that pathogen clones are collapsed to gene loci when representing the same gene loci.
Supplementary Table 2, part B	PPIN-1 protein-protein interactions.
Supplementary Table 2, part C	Protein-protein interactions experimentally mapped in Mukthar et al. (Figure 1B). Note that pathogen clones are not collapsed when representing the same gene loci.

* AI-1 interactions coming from AI-1 MAIN (AI1_M) and the AI-1 REPEAT (AI1_R) are distinguished. Subsets of intreractions coming from the literature (LCI) are highlighted: LCI BINARY (LCI_B) include only interactions binary (direct) interactions; LCI CORE (LCI_C) is a subset of LCI BINARY (LCI_B) including interactions supported by at least two publications or at least two experimental methods. See publication and supplementary material for more information.